I was seeing if I could get a biped ingame by just re-compiling the original with a few vertexes moved around as a test. For some reason this happened:

I have no idea what it is, what is causing it, or how to fix it. I have re-compiled the model many times. When I compile it the only thing I changed in guerrilla is the node list checksum as you could not spawn unless I made it the same as the original one.